WebSep 5, 2024 · A genome-wide association study (GWAS) implemented in the software package FarmCPU was employed to identify genomic loci for the starch pasting properties. 48 SNPs were found to be associated with ... WebApr 1, 2024 · Considering single-trait GWAS, several studies identified that FarmCPU increased the power of GWAS for complex traits (Tang et al. 2016; Kusmec and Schnable 2024; Miao et al. 2024). Our study ...
FarmCPUpp/farmcpu.R at master · amkusmec/FarmCPUpp · GitHub
WebApr 10, 2024 · The projected rise in global ambient temperature by 3–5 °C by the end of this century, along with unpredicted heat waves during critical crop growth stages, can drastically reduce grain yield and will pose a great food security challenge. It is therefore important to identify wheat genetic resources able to withstand high temperatures, … WebSep 1, 2016 · This paper focuses on the latter by combining modern genotyping with phenotypic data from separate datasets to map important traits under well-watered and … pretty but simple makeup
FarmCPUpp: Efficient Large-Scale GWAS bioRxiv
WebAug 26, 2024 · Genome-wide association studies (GWAS) test hundreds of thousands of genetic variants across many genomes to find those statistically associated with a specific trait or disease. This methodology ... WebOct 28, 2024 · FarmCPU is a more recently developed multi-locus GWAS model with robust tradeoffs for controlling false-positives without compromising false negatives (Liu et al. … WebFeb 22, 2024 · The single-locus model identified nine significant MTAs for various yield-related traits, while the FarmCPU model identified 74 significant MTAs. The availability of the wheat reference genome allowed for the description of MTAs in terms of both genetic and physical positions, and enabled more extensive post-GWAS characterization of … pretty clever sukienki